letter A val is 0.250000
letter T val is 0.250000
letter G val is 0.250000
letter C val is 0.250000
Running in TFBS mode
node 0 name hg18 qval 0.367879 parent hg18_
node 1 name hg18_ qval 0 parent (null)
//
NA REST.p3
PW 0.000000
PO         A          C          G          T       cons         inf
00     35.81      32.91      90.09     223.99          T        0.40
01      8.47      42.47      24.29     307.57          T        0.99
02     10.07     358.37       3.10      11.27          C        1.53
03    376.28       1.00       5.52       0.50          A        1.82
04      8.36       1.00     373.45       0.50          G        1.78
05     22.66     263.98      61.62      34.54          C        0.62
06    380.80       0.50       1.00       1.00          A        1.90
07      0.50     382.81       0.50       0.50          C        1.92
08      5.54     358.93       1.29      17.04          C        1.56
09    221.76      37.68      55.11      68.25          A        0.34
10     50.81     120.25      29.57     182.18          Y        0.26
11      6.01       1.00     375.80       0.50          G        1.81
12      5.01       0.50     376.80       0.99          G        1.83
13    347.87      23.93       1.99       9.02          A        1.43
14      3.42     305.60      58.75      15.03          C        1.05
15    380.82       1.00       0.50       0.98          A        1.90
16      6.00       1.98     371.82       3.00          G        1.74
17     39.93     258.68      40.06      44.13          C        0.55
18     79.16       6.95     179.82     116.88          K        0.36
19     50.05     225.38      80.33      27.04          C        0.39
20     32.44     300.08       3.01      47.28          C        0.96
//
//
NA E2F1..5.p2
PW 0.000000
PO         A          C          G          T       cons         inf
00      0.92      10.16       5.23     431.17          T        1.70
01      3.46      25.33       7.64     411.05          T        1.47
02      0.00       3.23       0.00     444.25          T        1.91
03      0.83     174.06     269.22       3.36          G        0.93
04      0.00      84.32     363.15       0.00          G        1.27
05      2.60     444.00       0.88       0.00          C        1.90
06      0.82       0.85     434.25      11.55          G        1.76
07      0.00     417.61      25.64       4.23          C        1.58
//
//
NA SNAI1..3.p2
PW 0.000000
PO         A          C          G          T       cons         inf
00      0.00      99.23       0.00       0.00          C        1.89
01     99.23       0.00       0.00       0.00          A        1.89
02      0.00       0.00      99.23       0.00          G        1.89
03      0.00       0.00      99.23       0.00          G        1.89
04      0.00       0.00       0.00      99.23          T        1.89
05      0.00       0.00      99.23       0.00          G        1.89
//
final prior REST.p3 is 0.003333 0.003333
final prior E2F1..5.p2 is 0.003333 0.003333
final prior SNAI1..3.p2 is 0.003333 0.003333
UFE wm prior 0.000000 0.000000
bg prior 0.990000 0.990000
ref species is hg18
treestring is (hg18:1);
em_prior is 0
em_wm is 0
do_segment is 0
seglen is 0
bg[0] = 0.250000
bg[1] = 0.250000
bg[2] = 0.250000
bg[3] = 0.250000
allocated memory
read sequences
parsed sequences
mybgfile is set to 
Calculating background frequencies from input sequence
Calculating background model (markov order = 0) ... 
