refspecies hg18
TREE ((((hg18:0.048,rheMac2:0.048):0.143,mm9:0.489):0.030,((canFam2:0.224,equCab1:0.149):0.011,bosTau3:0.246):0.047):0.365,monDom4:0.481);

Mode WMREF

minposteriorWM 0.5
wmdiff 0.000075

UFEwmprior 200.0
UFEwmfile ../../UFEmodels/UFE_mammals
UFEwmlen 21

markovorderBG 0
bgprior 0.99
bg A 0.25
bg T 0.25
bg G 0.25
bg C 0.25


restrictparses 0
sitefile sites
priorfile priors
minposterior 0.2


